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Hi!
I'm doing a project to do Differential gene expression on non-coding RNAs, so was planning to filter counts file only for non-coding probability.
But for that to happen, I'd need the read i…
idlip updated
1 month ago
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Hello everyone,
I downloaded 5 TCGA-BRCA samples (by choosing specific criteria - I got five tumor samples and their five normal samples) and I run `CIRIquant` on them. I performed differential exp…
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Hi,
I am new to differential expression. I am analysing a single cell dataset with three different conditions and ten cell types. I receive the following error as one cell type in one condition doe…
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We should next extract RNA and run qPCR for the remaining LCO project samples given that we [found differential expression in the seed and spat samples run previously](https://github.com/RobertsLab/re…
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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/722
### Describe the goals of this analysis module.
To use CellT…
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Might be worth thinking about allowing more complicated derivative expressions on the left side of differential equations.
```julia
@reaction_network begin
@variables A(t) B(t)
@equations …
vyudu updated
3 weeks ago
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Hi,
In the paper "N-of-one differential gene expression without control samples using a deep generative model" it is mentioned that the learned gaussians should yield a clustering of tissues based on…
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Quick rundown:I need to "shorten" derivative expressions and functions because the total expressions are just too large and convoluted.
Like:
d f / dx - > f_x
and
f(x,y,z) -> f
These are just e…
ghost updated
3 years ago
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Hello,
Thanks for developing such a great software. It is difficult for me to understand the results of associationTest and conditionTest.
```
sce1
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Is it possible to perform differential expression analysis for each patient and to get the output logFC for each patient
Thanks.