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# Currently
Our MRI loader searches for data in `anat` folder. See documentation [here](https://github.com/ivadomed/ivadomed/blob/34551756dd6cc3cbec7800a691683096d6a7305b/docs/source/data.rst).
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I just ran a test job and it failed with this error message.
```
dwi2mask: applying mask cleaning filter... done
mrconvert: [WARNING] requested datatype (Bit) not supported - substituting with …
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When a 4D image is opened, it seems like the windowing (right mouse button window drawing for contrast adjustment) is always performed on the first echo/timepoint.
Steps to reproduce:
Open this li…
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Hi,
My research group has recently used QSIprep, and would like some information on the DWI-to-T1 registration stage. While the majority of registrations were good, we noticed in a subset of images…
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Fix some initialization of properties, e.g. `b0MoCo_Rotate_bvecs_sh` so that can be accesible globally.
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## Summary
The merge_and_denoise_wf has a few nodes that can benefit from multithreading, but it looks like there is one instance where omp_nthreads isn't passed.
https://github.com/PennLINC/q…
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It would be great to have our carpetplot included in the reports, also showing head-motion estimations (framewise displacement and angular deviation after b-values rotation).
cc/ @arokem (assigned …
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This story stems from this post
https://github.com/MRtrix3/mrtrix3/issues/2474
DWI registration (and subsequent transformation) to T1 space is an important step in connectomics. There are a number of…
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I haven't done anything near a complete inventory of where metadata is loaded in QSIPrep, but in at least one location ([`get_metadata_for_nifti`](https://github.com/PennLINC/qsiprep/blob/527ef590f1c2…
tsalo updated
2 weeks ago
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Just some first ideas on how to structure the pipeline after a discussion during the 2024-08-08 SCT dev meeting:
# 1. Installation script
This script will be run only once and install SCT and d…