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Hi @wegnerce ,
Im currently working on metatranscriptome of plant samples as well and i've been referring to this amazing work for as a guidance for my bioinformatic analysis. Im very new to all bi…
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Having a clear idea of what kind of queries and reports we'd like to extract from our databases is crucial to knowing how to organizing them. This impacts a number of things I'll add in the comments.
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# pera
Automated extraction of prior information from signaling databases.
Pathway Extraction and Reduction Algorithm (PERA) was developed to automatically extract prior information from multiple s…
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I tried to download the PGDP5K dataset from the given webpage: http://www.nlpr.ia.ac.cn/databases/CASIA-PGDP5K/index.html
I downloaded the zip file for the dataset, but on extracting the zip file, it…
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### Version
CodeQL CLI 2.5.0
### Description of the issue
Possibly related to #5594
When using `codeql test run` and an `options` file containing `semmle-extractor-options` with `-source` or `…
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Dear developer(s),
I am new to the biobakery VM images and currently I am going through the biobakery_workflows tutorials following:
https://github.com/biobakery/biobakery/wiki/biobakery_workflo…
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Hi,
I was wondering if it is possible to include an argument in kmer-db that allows the inclusion of non-canonical k-mers in the construction and querying of databases. Thus far I have been using a m…
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We have to extract **province**, **city** information from MaxMind GeoIP2 database when using logstash filter.
But it seems that logstash default geoip plugin can just provide "latitude" and "longi…
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Hi,
I'm trying to roll out CodeQL scanning to some of our iOS (swift) repositories and I have issues with CodeQL breaking the build steps. The same steps that succeed by themselves will fail when C…
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Hi,
Thanks for the useful tool.
I am currently uncertain about the optimal type of transcriptome files to provide for my study. I am considering two approaches: directly using StringTie/Trinity fo…