refresh-bio kmer-db issues

refresh-bio / kmer-db

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

GNU General Public License v3.0

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issues

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out-of-memory

#26 JhinAir opened 4 weeks ago
1
option to include non-canonical k-mers

#25 haneubau opened 4 months ago
1
build step failed after throwing an instance of 'std::bad_alloc'

#24 rmormando opened 6 months ago
1
short read data

#23 rmormando opened 7 months ago
1
Illegal instruction while running kmer-db

#22 gracegyho opened 8 months ago
1
Enhancement Request: Including Specific kmer Information in Output Files

#21 qbdong122 opened 1 year ago
1
limitations ?

#20 lmanchon opened 1 year ago
1
Much fewer k-mer loaded from database during new2all

#19 nekokoe closed 1 year ago
3
Git ignore *.o and binary kmer-db

#18 zwets closed 1 year ago
0
Is there anyway to transform kmer table to database ?

#17 biozhangzhou opened 2 years ago
0
Convert db to csv

#16 nicdemon closed 2 years ago
0
Unexpected results

#15 zhangrengang closed 2 years ago
10
too slow

#14 zhang570221322 closed 2 years ago
1
Makefile update

#13 agnieszkadanek closed 3 years ago
0
one2all/new2all output counts for common k-mers between multiple db-samples

#12 mihkelvaher opened 4 years ago
3
Seed for minhash algorithm

#11 CBorreda opened 4 years ago
8
v1.6.2 not compiling in CentOS7 and pre-compiled binary missing libraries

#10 fpusan closed 4 years ago
3
Illegal instruction

#9 ccrclot closed 2 years ago
2
Please add a license and the appropriate LICENSE or COPYING file

#8 andersgs closed 4 years ago
2
Use full paths as sample names in the database

#7 agudys closed 2 years ago
2
Support assemblies in one2all mode

#6 agudys closed 5 years ago
1
Distance description

#5 royfrancis closed 5 years ago
1
kmer-db build failed

#4 royfrancis closed 5 years ago
3
distance calculation evokes std::bad_alloc problem

#3 rmostowy closed 5 years ago
4
kmer-db build failed

#2 dgg32 closed 2 years ago
10
Fails to build from source

#1 kloetzl closed 5 years ago
9