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When aligning sequences with indels in repeat regions, the alignment is ambiguous. Most aligners implicitly right or left shuffled gaps, but this choice is arbitrary: the real region of ambiguity span…
reece updated
6 months ago
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Currently the schema $id is given as a URL of schemablocks at root.
For example: https://github.com/ga4gh-schemablocks/blocks-json-schema/blob/e3d0e382cf245c544427c32b8633ab8cda70f624/src/yaml/Indivi…
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## Problem
There are situations where managers of GA4GH API products deem certain functionalities "nice to have", but feel that they may not be necessary for all implementations or that they would …
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## Expected Behavior
Template generation or execution should be successful
## Actual Behavior
```
$ cwltool --make-template quay.io/wtsicgp/dockstore-cgpmap:3.0.0
/home/kr2/.local/bin/cwltool…
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Refactor `deploy-cromwell-on-azure` and `deploy-tes-on-azure` and extract a common project. The common project should be in the `microsoft/ga4gh-tes` repo. Then, add the common project as a project …
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Various times we've discussed what we refer to as the *search function*. It's been raised in discussion and also in issues, e.g.:
- https://github.com/ga4gh/seqcol-spec/issues/7#issuecomment-73387…
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(originally submitted by @kbarrass1252)
Hi @jmfernandez ! TY so much!
However - we still have an issue as follows:
"(.pyWEenv) *****@ip-***-**-**-**:~/wfexs/WfExS-backend$ python3 WfExS-backe…
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In ADAM/Mango a genotype call is defined as a list of `GenotypeAllele` here:
https://github.com/bigdatagenomics/bdg-formats/blob/master/src/main/resources/avro/bdg.avdl#L966
`GenotypeAllele` is de…
jpdna updated
7 years ago
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According to TES [v1.0](https://github.com/ga4gh/task-execution-schemas/blob/9e9c5aa2648d683d5574f9dbd63a025b4aea285d/openapi/task_execution_service.openapi.yaml#L64-L65) and [v1.1](https://github.com…