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While exploring the results in the echolocatoR Shiny app, I noticed that FINEMAP never returns more than 1 credible set per locus. This was confusing since SuSiE often returns more than 1 credible set…
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just got this running
Note that
Polyfun susie does not get to run as it is missing the environment
Also note the software is installed
## Code
```
columnsnames = echodata::construct_col…
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I don't know if this is just me and others on mac can do this successfully, or if no one is trying this on macOS and it's just broken, but while `conda build recipes/anise_basil` and the remote circle…
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Hello, I have installed the ggcoverage and currently testing this package running ggcoverage() examples. But the problem arose when I wanted to draw an ideogram, here's the error message:
Loading ide…
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HI,
I am having this issue running eQTL.Catalogue.query. I thought It could be somehow related with tabix, so I updated the yaml file. I removed tabix, and added htslib to solve the environment aga…
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Hi,
Thank you for writing such a nice package.
I have a question regarding the plotting the genes in gg_locusplot function.
When I run the code with "plot_genes = FALSE", it is perfectly f…
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If minimap2 is installed in a linux OS via `apt-get`, the executable is located at `/usr/bin/minimap2`, and so "k8 and/or paftools.js" are not located in that directory.
It appears that the linux …
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I'm encountering issues with the group.by parameter for clonalOverlap and clonalCompare. When I supply a group.by variable, the plots still default to grouping by sample. This happens both in v2.0.5 a…
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## 1. Bug description
Hi I am unable to properly run finemap_loci with a quantitative GWAS.
Few things to highlight so far.
- The sample size column to do finemapping for a quant GWAS is not …
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I just got this running
Note that:
- ABF does not get to if proportion_cases is missinng
- polyfun_susie is missing the environment.
## Code
```
columnsnames = echodata::construct_colmap(m…