-
Hi!
I've been wondering if it's possible to add multithreading or GPU support to the computation of persistence intervals in a straightforward way. This could be particularly desirable for very lar…
-
There is unclear documentation for the padding used in VietorisRipsPersistence. The documentation says that diagrams may be padded with some points on the diagonal, but it does not say what the paddin…
-
**Is your feature request related to a problem? Please describe.**
Does Giotto-deep work only on TPU? What about Apple Silicon GPU since PyTorch has provided an MPS solution to using Apple GPU with…
-
Follow up on https://github.com/giotto-ai/giotto-tda/issues/109. Currently nightly builds are named `giotto-tda-nightly` and are uploaded [on PyPi](https://pypi.org/project/giotto-learn-nightly/). Thi…
-
Hi,
Giotto Suite 2.0.0.997 is currently the version I installed. However, the function createGiottoObject() no longer supported processed data, such as normalized expr, scaled expr because of decreap…
-
Hello,
I am currently experimenting with time series classifies using Taken's embedding. The function takens_embedding_optimal_parameters is behaving somewhat differently than I expected. I am gett…
-
Dear Giotto team,
Thank you for reading my issue.
I have a small question regarding plotting scran DEGs using two different functions plotMetaDataHeatmap and plotHeatmap:
I ran these line of…
-
thank you so much for creating this tool
quick question regarding utilization of cell chat with spatial data:
https://htmlpreview.github.io/?https://github.com/sqjin/CellChat/blob/master/tutor…
-
**Describe the Error**
I have transcript level data from Visium slides generated using nanopore, the code below generating `addStatistics` gives and error however at gene level analysis the error doe…
-
@RubD @mattobny @josschavezf @gcyuan
Hello Giotto team,
In Giotto Suite for 10X Visium analysis of mouse/brain, you use "dimensions_to_use = 1:10" to run the UMAP function.
We are currently run…