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At @related-sciences, we created a Python library called [nxontology](https://github.com/related-sciences/nxontology) for computing intrinsic semantic similarity between pairs of nodes in an ontology.…
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Is there any plan to get these plugins integrated into the defaults for bcftools so we do not have to separately compile with them?
BEFH updated
6 months ago
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Dear authors,
Here is the other and last error (I cross fingers) that I get when performing mtag with the meta_format option.
Of note, I used exactly the same sumstats to do mtag without using …
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I just got this running
Note that:
MAF is not inferred even though I am passing Freq col, and I am seeting maf to calculate
## Code
```
columnsnames = echodata::construct_colmap(munged= FAL…
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Dear Python_convert team
When I run sumstats.py clump, I get the following error, do you have any ideas of what's going wrong?
Call:
./sumstats.py clump \
--sumstats ASD_2023.mat.csv \
…
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## 1. Bug description
Hi I am unable to properly run finemap_loci with a quantitative GWAS.
Few things to highlight so far.
- The sample size column to do finemapping for a quant GWAS is not …
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Also encountered "The estimated prior variance is unreasonably large" using ieugwasr ld_matrix_local function to calculate the ld matrix. As I have checked the original code of _ld_matrix_local_ func…
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I just got this running
Note that:
- ABF does not get to if proportion_cases is missinng
- polyfun_susie is missing the environment.
## Code
```
columnsnames = echodata::construct_colmap(m…
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I was trying to use SVAnnotate to generate annotation for my own `vcf` file:
```
$java17 -jar $gatkjar SVAnnotate -V 31354420/250000.vcf --protein-coding-gtf $newgtf_path -O 31354420/annotated_25000…