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Hello,
I am running LD score regression for the first time and I am completely new in these types of analyses. I have 3 GWASes (EDIC, GOKIND, UKB) where I tested the same binary phenotype (let’s ca…
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@hsun3163 please fill it up.
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Dear ldsc team,
I am running -rg on 11 traits with conversion to the liability scale by including population and sample prevalences. When inspecting the output file, I observed a discrepancy betwee…
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In the analytics discussion we have been discussing about how to handle summary statistics for a given variable in a study (e.g. heritability, CV, Wald p-value, etc.)
One option would be to define an…
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Hello, I want to analyse African GWAS data with LDSC. However, I have been unable to find LD scores with African ancestry online. I have generated LD scores using 1000G data, but I find heritability a…
xEmz updated
5 months ago
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@pnrobinson wrote (in Slack):
On the gene page where there is a field called Also known as, For FBN1, I see this:
MASS, OCTD, SGS, Marfan syndrome, asprosin, FBN, MFS1, WMS, fibrillin 1 (Marfan sy…
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How to interpret the occurrence of "NA" in the "corr" column in the result file?
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Hi,
We are currently running a partitioned heritability analysis with our annotation and 10 GWAS. Some of them don't include the frequency of the SNP, and even though I have observed that this inf…
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Hi Cloufield team, it was a struggle for a GWAS newbie like me that finally went to the [SNP-Heritability estimation by GCTA-GREML section](https://cloufield.github.io/GWASTutorial/14_gcta_greml/). No…
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Expected Behavior
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In addition to datasets, allow the user to select a specific trial for analysis.
This should also b…