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Hello Kraken team,
I am analysing shotgun data using Kraken2. So I built only protist database using refseq genomes from NCBI. I used different confidence levels (0 to 0.7) and increased --minimum-…
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Would love to have some insight to what's been learnt from Kraken that's prompting a rework and what the goals of kraken.next are and how those goals are going to benefit large teams like PayPal.
I'm…
rvagg updated
10 years ago
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A CLI application for interacting with Kraken.
gmosx updated
5 months ago
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hello:
**there was no error whill build kraken2 standard database, and the final size totaled 47GB, is that right size??**
total 47G
```
-rw-r--r-- 1 root root 47G Nov 16 07:45 hash.k2d
-rw-r-…
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Hey @kristyhoran
List of potential enhancements that could be useful to implement for bohra we have discussed.
1. make bohra compatible using a contigs only set of inputs - that way can be used f…
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Running this command on RPI4 results in an error:
docker run --rm -it --env-file=/home/xxx/docker/bitcoin-dca/config/bitcoin-dca.conf jorijn/bitcoin-dca:latest withdraw --all
In KrakenClient.php…
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Steps to reproduce, using RVM with Ruby 2.3.0 on a Mac (El Capitan), bundler 1.11.2:
Gemfile contents:
``` rb
source 'https://rubygems.org'
ruby "2.3.0"
gem 'kraken_ruby', '0.5'
```
``` sh
rvm ins…
Sjors updated
8 years ago
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Hello,
Can someone explain this format or have a tool to summarize the outputs?
Something that can take the file and transform by ranking:
121001 root bacteria
100010 root Proteobacteria
I a…
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A minor point, documenting because it does get in the way of my UX, but I'm obviously happy to use the app without this changing.
1) I'm in the collection browser and I filter the collection (e.g. …