-
- [x] Use the ODK to create the initial AK project ontology
- [x] Will we be publishing this on OBO Foundry? Yes
- [x] Fill out with additional ontologies
- [ ] Customize term imports so only relev…
-
I believe we arrived at a place where this would represent an array with any shape:
```yaml
classes:
MyClass:
attributes:
an_array:
range: int
array:
```
but c…
-
I suspect that this overlaps with a lot of existing issues, along the lines of "make it easy for people to find release artifacts"
- #380
- https://github.com/GenomicsStandardsConsortium/mixs/issues…
-
There are two issues with the current generators:
- they don't use dataclasses, which means it is hard to mentally reason about class variables, object attributes, and inheritance
- there is a mix…
-
Our targets include
- python
- json schema
- OWL
JSON-Schema supports a subset of javascript/ECMA regexes, described here:
- https://json-schema.org/understanding-json-schema/reference/regula…
-
"LinkML is a flexible modeling language that allows you to author schemas in YAML that describe the structure of your data". Perhaps we can represent the FAIR Genomes schema in LinkML to increase oper…
-
CLI doesn't implement all features in code interface
> Usage: linkml-schema-fixer [OPTIONS] COMMAND [ARGS]...
>
> Apply schema-fixer commands.
>
> Options:
> -v, --verbose
> -q, --qui…
-
When looking at https://microbiomedata.github.io/submission-schema/AirInterface/#induced (for example)
```yaml
air_PM_concen:
...
domain_of:
- Biosample
- AirInterface
-…
-
- [ ] metadata as object store on GitHub, and a running database for loaded ...
- [ ] proof read everything from search app
- [ ] move columns metadata to attributes, think about length of int and c…
-
See:
- https://github.com/jannahastings/py-horned-owl/pull/15
Which will be in 0.3.0: https://github.com/jannahastings/py-horned-owl/releases/tag/v0.3.0rc1