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Example code
```
import pims
image = pims.bioformats.BioformatsReader(somefilename)
```
And error messages that spit out
```
UserWarning: loci_tools.jar not found, downloading
warn('loci…
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Hi!
I'm trying to run DIYABC in R, but after creating the project and run the simulations, it gives me the next error:
!!! I have caught an exception which is:
Erreur dans readheaders().
Not en…
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If metadata is present as a filed called "metadata.txt", it is somehow read and this seems to cause a crash preventing any data to read.
Here is an example metadata.txt file causing such a crash:
[m…
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Dear Omeed,
When running MTAG on the GWAS results of two related traits (UKB data, phenotypic correlation 0.6), with sample overlap, I picked up some loci that were not significant in the GWAS. Ho…
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A build attempt of loci-firmware/main produces a RAM over-budget build result:
`/Applications/ArmGNUToolchain/13.3.rel1/arm-none-eabi/bin/../lib/gcc/arm-none-eabi/13.3.1/../../../../arm-none-eabi/b…
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Hi,
Thanks for developing this tool. and I have two questions about the gtf annotation file that required by telescope
1. how to generate the file format like you provide in the sample directory…
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I have array genotypes and thus most of Y loci are no known, is it possible to improve algorithm so that it will not assign the wrong haplogroup? For example, our population have no N1a individuals, y…
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Hello Emese,
Firstly thank you for creating this repository, it is a really nice simple-to-use set of functions for COI databases. I'd like to ask your opinion on using it for making databases for …
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I'm looking for a way to programmatically access the currently selected residues. I checked the methods in `viewerInstance.visual` but there was no obvious way of getting a data object.
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Hi, thanks for developing this useful software!
I have a problem about the input file. I have a vcf file containing 420 samples with a reference genome of ~400m bps. For some loci, different sample…