mlbendall telescope issues

mlbendall / telescope

Quantification of transposable element expression using RNA-seq

MIT License

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issues

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fix issue #15 'int' object is not iterable

#59 fizwit opened 7 months ago
1
create new release

#58 fizwit opened 7 months ago
0
Issue installing newest version (cython problem?)

#57 murphytho opened 7 months ago
3
ValueError: fetch called on bamfile without index

#56 SabinaMT opened 7 months ago
0
Removed functionality for scTelescope and validated new command line arguments

#55 mgreenig opened 7 months ago
0
--stranded_mode RF

#54 sanhe374 opened 8 months ago
3
No 'final_count' column in telescope statistics report after running the test command

#53 Guangsheng357 opened 9 months ago
0
telescope: error: unrecognized arguments: --barcode_tag CB --stranded_mode RF

#52 Kiliankleemann opened 9 months ago
1
telescope installation

#51 fatemehkordevani opened 9 months ago
1
error message

#50 hkoo87 opened 10 months ago
2
make telescope faster

#49 AlisaGU opened 11 months ago
2
Installation Error: Module 'pysam.libcalignmentfile' has no attribute 'PileupColumn'.

#48 Rohak72 closed 11 months ago
0
extension of issue https://github.com/mlbendall/telescope/issues/44

#47 pdeepak87 opened 1 year ago
5
Installation to high performance computing cluster failing

#46 guypwhunt opened 1 year ago
5
Empty output caused by no reported overlap in annotation

#45 M-K1 closed 1 year ago
4
Deprecated numpy alias causing AttributeError

#44 walidabualafia closed 1 year ago
3
downstream

#43 saramoein372 opened 1 year ago
0
Status of stellarscope

#42 skchronicles opened 1 year ago
0
scRNA data from poly A priming sequencing

#41 HJ234 closed 1 year ago
1
error: invalid choice: 'bulk'

#40 DanielaMombach closed 1 year ago
4
Differential analysis

#39 ZunpengLiu opened 2 years ago
0
Telescope for Single cell data

#38 tawfikd opened 2 years ago
0
Error with multiprocessing and `--updated_sam`

#37 bernt-matthias opened 2 years ago
0
index.gtf file issue (loci column and file format)

#36 jamesc99 opened 2 years ago
2
telescope: error: unrecognized arguments: --stranded_mode

#35 jviot closed 2 years ago
2
New umi tracking

#34 mlbendall closed 2 years ago
0
Stellarscope report features are incorrect

#33 mlbendall opened 2 years ago
0
How to run telescope on single cell dataset

#32 zijzhang closed 2 years ago
1
KeyError

#31 biostars-nyc opened 2 years ago
0
new release?

#30 GodloveD closed 2 years ago
1
New umi tracking

#29 mgreenig closed 2 years ago
0
AssertionError: Error

#28 AssumeAssume opened 2 years ago
0
Install Telescope with Miniconda3

#27 YangpingLi closed 2 years ago
1
Cellsplit

#26 mgreenig closed 7 months ago
0
Single cell

#25 mgreenig closed 2 years ago
0
Stranded mode

#24 mgreenig closed 2 years ago
0
.

#23 wangliying235 closed 2 years ago
0
Clarification of required BAM sorting method

#22 rhughwhite closed 1 year ago
2
Dev

#21 mlbendall closed 3 years ago
0
Only use "exon" feature types

#20 mlbendall closed 3 years ago
0
TypeError: '<=' not supported between instances of 'int' and 'Interval'

#19 zya226 opened 3 years ago
1
Annotation for mouse (mm10)?

#18 YiweiNiu opened 3 years ago
3
Counting by repName

#17 rn383 closed 3 years ago
3
Installing telescope without conda

#16 xunchen85 closed 4 years ago
0
Error when running telescope assign

#15 jalalsiddiqui opened 4 years ago
9
Consideration of ERV splicing events.

#14 yyoshiaki opened 4 years ago
2
KeyError: 'locus'

#13 somethingp closed 4 years ago
4
Telescope 'MemoryError'

#12 hchintalapudi closed 4 years ago
0
TypeError: 'int' object is not iterable

#11 froy0212 opened 4 years ago
2
Number of transcripts in report

#10 karini925 opened 4 years ago
2