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Following the instructions in the order of the root readme.md file, i get an error when running the ML and combined models (although the fuzzy, bipartite, and markov all run fine):
```
Error in py…
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inferCNV uses a [hidden markov model](https://github.com/broadinstitute/inferCNV/wiki/inferCNV-HMM-based-CNV-Prediction-Methods) to turn the smoothed gene expression into genomic regions that are subj…
grst updated
5 months ago
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Hello everyone,
i am currently working on branch 1.8.0 (due to compatibility with stormpy) and trying to solve timed reachability properties for markov automata.
I have encountered a difference …
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We now have the base methods
- Linear Regression
- Markov Chain.
To Do:
-Research Representation of the input vector
-Fourier Transform
-Training and Test data: Find similar music to train th…
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When I want to analyze Hidden Markov Network, I have the following problem
`hmm=pyemma.msm.bayesian_hidden_markov_model(dtrajs,5, lag=30,stride=10, mincount_connectivity=0.2)`
> Sampling HMSMs…
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HMM page is not linked correctly from readme file.
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When setting up models from an existing transition matrix, using the `dt_model` in a regular ML MSM and in a sampled MSM yields different scaling.
```python
bmsm = pyemma.msm.models.SampledMSM(P=tma…
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I have been thoroughly enjoying and using the Python API from this library for a research project related to language models and hardware design.
I understand the use case of the plugin system is d…
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- [x] Initializers for model parameters
- [x] Splines for baseline hazards
- [x] Fix ISplines for baseline intensities - constrain all parameters to be the same sign, currently constrained to all be…
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p(r),q(r), xi(r) etc,