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icbi-lab
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infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
https://infercnvpy.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
122
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[pre-commit.ci] pre-commit autoupdate
#138
pre-commit-ci[bot]
opened
2 days ago
0
Update badge
#137
grst
opened
1 week ago
0
[pre-commit.ci] pre-commit autoupdate
#136
pre-commit-ci[bot]
closed
1 week ago
0
Take into account that chromosomes may be removed when specifying manual reference
#135
grst
closed
1 week ago
0
ValueError: Reference must match the number of genes in AnnData.
#134
HZT55
closed
1 week ago
3
[pre-commit.ci] pre-commit autoupdate
#133
pre-commit-ci[bot]
closed
1 week ago
0
Feat: Feature gene annotation
#132
grantn5
closed
1 week ago
8
Update README.md
#131
lorenzoamir
closed
2 weeks ago
0
Update template to v0.4.0
#130
scverse-bot
closed
2 weeks ago
1
[pre-commit.ci] pre-commit autoupdate
#129
pre-commit-ci[bot]
closed
2 weeks ago
1
Per gene copy number signal.
#128
sohrabsa
closed
1 week ago
5
[pre-commit.ci] pre-commit autoupdate
#127
pre-commit-ci[bot]
closed
3 months ago
1
[pre-commit.ci] pre-commit autoupdate
#126
pre-commit-ci[bot]
closed
3 months ago
1
Update template to v0.3.1
#125
scverse-bot
closed
1 month ago
0
Update _copykat.py
#124
josephreplogle
closed
4 months ago
1
Adding copykat cell.line parameter?
#123
josephreplogle
closed
4 months ago
2
infercnvpy.tl.infercnv result matrix is of incorrect dimensionality
#122
sean-at-tessera
closed
4 months ago
2
stable release
#121
wangjiawen2013
opened
6 months ago
3
[pre-commit.ci] pre-commit autoupdate
#120
pre-commit-ci[bot]
closed
4 months ago
1
template update icbi lab infercnvpy v0.3.0
#119
grst
closed
6 months ago
1
Update gtfparse version requirement
#118
jpintar
closed
6 months ago
2
Update template to v0.3.0
#117
scverse-bot
closed
6 months ago
0
[pre-commit.ci] pre-commit autoupdate
#116
pre-commit-ci[bot]
closed
6 months ago
1
Update release.yaml
#115
grst
closed
9 months ago
0
Update tutorials
#114
grst
closed
9 months ago
1
Fix #63
#113
grst
closed
9 months ago
0
Pin gtfparse < 2
#112
grst
closed
9 months ago
0
template update icbi lab infercnvpy v0.2.22
#111
grst
closed
9 months ago
1
Fix heatmap passing of uns data to scanpy.pl.heatmap
#110
jpintar
closed
9 months ago
1
infercnvpy.pl.chromosome_heatmap doesn't pass dendrogram data to scanpy.pl.heatmap
#109
jpintar
closed
9 months ago
3
genomic_position_from_gtf Attribute Error
#108
Tester3454
closed
9 months ago
3
rename toggle_string_cache to enable_string_cache
#107
christophechu
closed
9 months ago
3
Update template to v0.2.22
#106
scverse-bot
closed
9 months ago
0
[pre-commit.ci] pre-commit autoupdate
#105
pre-commit-ci[bot]
closed
9 months ago
1
Update template to v0.2.21
#104
scverse-bot
closed
10 months ago
0
Update template to v0.2.20
#103
scverse-bot
closed
10 months ago
0
[pre-commit.ci] pre-commit autoupdate
#102
pre-commit-ci[bot]
closed
10 months ago
0
Update template to v0.2.18
#101
scverse-bot
closed
10 months ago
0
Update template to v0.2.15
#100
scverse-bot
closed
11 months ago
0
Update template to v0.2.14
#99
scverse-bot
closed
11 months ago
0
Update template to v0.2.13
#98
scverse-bot
closed
11 months ago
0
[pre-commit.ci] pre-commit autoupdate
#97
pre-commit-ci[bot]
closed
11 months ago
1
[pre-commit.ci] pre-commit autoupdate
#96
pre-commit-ci[bot]
closed
11 months ago
1
Update template to v0.2.11
#95
scverse-bot
closed
1 year ago
0
Automated template update from cookiecutter-scverse
#94
github-actions[bot]
closed
1 year ago
1
[pre-commit.ci] pre-commit autoupdate
#93
pre-commit-ci[bot]
closed
1 year ago
1
added mouse functinality for copyKAT
#92
abyssum
closed
1 year ago
2
copykat with mouse data
#91
muntajihad
closed
1 year ago
8
[pre-commit.ci] pre-commit autoupdate
#90
pre-commit-ci[bot]
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#89
pre-commit-ci[bot]
closed
1 year ago
1
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