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Hi,
Thank you for a great resource for CAZyme annotation and substrate prediction. I was wondering since the annotation is trained on human gut microbiome (GMGC), would you recommend running it on …
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as suggested by James M. @jmacklin -
"This challenge could add another whole layer of data and parasite interactions! https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1008028…
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There was a concern on the [qiime forums](https://groups.google.com/forum/#!topic/qiime-forum/-Q-BAhkVXY0) that `compute_core_microbiome.py` fails when there is no observation metadata (i.e. taxonomy)…
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### R code from [EBI Metagenomics workshop 2021 - MGnifyR](https://beadyallen.github.io/MGnifyR/Exercises.html)
```
# installation
if (!require("BioCManager", quietly = TRUE))
install.packages…
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https://docs.google.com/spreadsheets/d/1eo71z8M-NKWFleNd1ihD1s9ZVzLo5ABJ/edit?gid=482799464#gid=482799464
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Dermal injury drives a skin to gut axis that disrupts the intestinal microbiome and intestinal immune homeostasis in mice – Tatsuya Dokoshi – Nature Communications
https://www.nature.com/articles/s41…
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Diagnostic and prognostic potential of the microbiome in ovarian cancer treatment response - Abigail E. A - nature
https://www.nature.com/articles/s41598-023-27555-x?fromPaywallRec=false
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Link: [Differences in the microbial profiles of early stage endometrial cancers between Black and White women.](https://www.gynecologiconcology-online.net/article/S0090-8258(22)00142-1/fulltext)
Ye…
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**Describe the bug**
[no Plasmodium by microscopy](http://purl.obolibrary.org/obo/EUPATH_0021027)
Definition: a data item that is the specified output of a microscopy assay that has a sample of bloo…
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Costa S, Fonseca JVDS, Scaccia N, et al. Oral lesion and microbiome diversity in COVID-19 hospitalized patients.. Authorea Preprints; 2023. DOI: 10.22541/au.169511765.50376146/v1.
Preprint availabl…