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Dear Christoph,
Where I can find the final assemly result in outputs from MITObim.
In tutorial (see **https://github.com/chrishah/MITObim**), you mentioned that it is under the following:
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**Respected developer：**
**hello!**
I installed all the required dependencies for MitoHiFi using conda and also correctly installed MitoFinder. When running the provided example data with the lates…
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Hi,
I'm getting a similar error to what has been posted previously.
Basically, when I run norgal (see below) I get an error that says "Failed Assembling all reads for ND determination.. Exit."
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Hi Team,
I have been stuck with this issue for a long time. I was able to run NOVOPlasty on my local machine but when I am trying on azure machine amd it failed. I have tried with multiple configur…
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Hi All,
I started to convert the recent @egreyavis [script](https://github.com/Maine-eDNA/mednaTaxaRef/blob/main/Erin_TestScript.Rmd) to a more workflow friendly form. I forked this repos and will …
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Hello,
I'm trying to get the mitogenome of a damselfly. I have ddRAD 2x138 bp. I'm using a COI fragment (629 bp) as seed, from the same sample. When I set the "extended seed directly" as no, the log …
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Hi, in the graphShort session, is the required input file mitochondrial genome sequencing data or whole genome sequencing data?
I see a warnning:
Warning:` Please note that the SPAdes is not rec…
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In the attached results, there are several assemblies in the Heteroplasmy_assemblies_project.fasta file that do not contain the heteroplasmic position. The VCF file indicates that there is a SNP, but …
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Hi, I want to use PAMT to assemble soybean mitochondrial genome, here is my script:
PMAT autoMito -i canu_raw.correctedReads.fasta.gz -o ./19.chloroplast_assembly/07.pmat_data/test1 --task p1 -st O…
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Hi,
I am trying to use minigraph-cactus for a python program executable in a cluster. The program should be able to map and align 8 input mitogenome sequences given in one fasta file, to generate a …