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I had the random idea this morning to add [MorphVAE](https://www.biorxiv.org/content/biorxiv/early/2021/06/15/2021.06.14.448271.full.pdf) or something more recent on this front to jaxley. I think this…
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I'd suggest when writing the mapping function from assembly equivalences to CATMAID skeleton representations to have an intermediate data representations of the skeletons, connectors, and associated n…
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This thread is meant to brainstorm about source initialisation for multi-resolution images.
The issue being: How to initialise galaxy morphologies using blended images on different grids and with …
herjy updated
3 years ago
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Regarding the documentation of the SONATA circuit config, as published here:
https://sonata-extension.readthedocs.io/en/latest/sonata_overview.html#circuit-config
I'd like to point out that the ex…
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In Python, if a Section was known to NEURON as `soma`, we can access it via `h.soma`. It would be nice to do something similar in MATLAB. With the `allsec()` pull request, people can acheive the same …
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Hello!
I'm in the process of providing support for reading NeuroML2 morphologies in the Arbor simulator (https://github.com/arbor-sim/arbor), and have some questions concerning the semantics of `pa…
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One question worth asking is _in the current implementation, is there sufficient information preserved through the construction of the graphs?_ That is to say, does the process of going from _image_ t…
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What we could do is to access each stops also clicking on markers. In fact when the overview map is up, one could also freely jump on the different ones, while the story itself is still always availab…
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Goal is to view SWCs on Colab.
[Viewing on desktop apps is nice but this project has an explicit goal of realizing all UI in Jupyter. But the ShuTu desktop app runs on windows, macOS, Linux – if o…
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https://github.com/BlueBrain/NeuroM/blob/master/neurom/features/bifurcation.py#L57
For the following bifurcation point:
bif_point [Section(id=30, type=2, n_points=1), Section(id=31, type=2, n_p…