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Hi guy, how to use CAMERA (function name: cameraPR) in the limma R package (v3.42.2) in the Pathway enrichment analysis?
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I'm having a persistent issue where the R program is running but not calculating p-values for the pathways. Here's what the data and script output look like:
[script output:]
WARNING : NA NA NA…
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### Setup
I am reporting a problem with GSEApy version, Python version, and operating
system as follows:
```
3.8.17 | packaged by conda-forge | (default, Jun 16 2023, 07:06:00)
[GCC 11.4.0…
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I would like to know what is the exact dataset used to generate the toy_ppi dataset in example_data folder (input files used to generate the pre-processed dataset). What are the node features availabl…
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Hello,
I was trying to build an Autoannotate clustering from the command line using a command:
`autoannotate annotate-clusterBoosted clusterAlgorithm=MCL labelColumn=EnrichmentMap::GS_DESCR maxWord…
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Hello,
I'm looking for the C5 Ontology gene sets https://www.gsea-msigdb.org/gsea/msigdb/human/genesets.jsp?collection=C5 but cannot find them in your Genesets_data
![image](https://github.com/user…
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Thank you for this great package, I love the word cloud idea, and love the utilities to compare clustering results!
I wonder if it would make sense to create a generic version of `simplifyGOFromMul…
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**Describe the bug**
A clear and concise description of what the bug is.
Hi, When I used "dc.get_resource('MSigDB', organism='mouse')" or "dc.translate_net(target_organism = 'mouse')", I got this …
wgsim updated
3 weeks ago
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作者你好，很感谢你开发的包。在使用的时候出现一个问题，想请教一下。
method里添加了ssgsea一直报错，R4.2版本，GSVA1.44报错，1.45报错。1.4报错。取消了ssgsea就好了。
想请教一下如何修复这个问题，谢谢谢！
pbmc3k.final1
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I tried to use "scatterplot