-
Hi.
I have three multi-omics datasets of RNA seq (vst normalization), DNA methylation (beta value) and plasma metabolomics.
I normalized my metabolite data with the total sum of all detected ions a…
-
**Deliverable this task is associated with**
_See Deliverables tab here: https://docs.google.com/spreadsheets/d/1z_b6WbuTk4pI0Q-Z-rfCgC-8R3m3F2_JDevYuK8CjYE/edit?usp=sharing_
- 3
**RACI**
…
-
the goal is to provide a lightweight alignment between qiime and the NMDC schema. This could be encoded either in mappings in the schema, or simply in comments
Some initial rough notes:
https://…
-
This ticket outlines what I have in mind for now to get us started. I might continue to edit this post as I can think of more to add or reorganize. So please check back on this from time to time.
…
-
Hi developers,
Thanks for your excellent work!
After reviewing the provided tutorial, I noticed that the examples are primarily focused on simulating data where each gene is regulated by 1 peak.…
-
When data one alteration type are missing from the TCGA, the package returns a generic message:
> "No alteration to display for the selected tumor types and alteration types"
It would be more us…
-
Hello,
Do you think TRUST4 can work with whole exome sequence (WES) data? Perhaps, it could provide more information if it runs for both normal blood and normal samples. If not, do you know any ot…
-
-
Are the mrna and CNVS used in your LGG,LUAD,KIRC experiments logarithmic or normalized? May I ask whether the network structure and network hyperparameters are consistent with the gbm experiment?
-
Hi. I have a dataset aiming to compare dose response effect of treatment v.s. a control group, which means I need to matching the control with at least 2 people -- one from dose A group and another fr…