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I'm trying to bulkload other identifiers that include some new flavors of GenBank identifiers that are not, actually, GenBank but rather different databases at NCBI, such as BioSample (which is in Arc…
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Extract the full Napa DB after all Re-ID-ing has been applied.
Validate versus v8 and v10 schemas
Extract to TTL and import to GrqaphDB
schema slot | check | results
-- | -- | --
part_…
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### **March 2, 2023**
### **Dan:**
I have updated our existing biomarker ER diagram, highlighting “mandatory" items in the model that form the core definition of a biomarker, based on the FDA/NIH …
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Not sure whether this is from your pipeline, but even if not, I bet you can find the right people's contact info quicker than I can.
I've come across several INSDC (ENA/GenBank/DDBJ) records with t…
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_This illustrates approaches for repairing columns with enumerations of permissible values, also known as controlled vocabularies._ Look for 'enumeration' in the MIxS' `Expected value` column, or a ra…
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biosample processing is documented to be a process that takes samples as inputs and generates samples as outputs; ie sample->sample
```yaml
biosample processing:
is_a: named thing
desc…
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This task was suggested by @turbomam, who said all the hyperlinks are defined in Markdown files in the `docs` directory.
I plan to use https://github.com/lycheeverse/lychee to check the hyperlinks.…
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**Is your feature request related to a problem? Please describe.**
More NCBI identifiers needed.
More and more genomic data is being associated with Arctos specimen records. We currently have, …
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If I remember correctly, we agreed that experimental protocols using
* internal barcoding (i.e. not resolved by the sequencer) that is used for
* multiplexing at or above the cell level (i.e. not UM…
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Let's consider a minimal phenopacket:
```json
{
"id": "phenopacket-id",
"metaData": {
"created": "2023-06-14T13:39:42.714Z",
"createdBy": "PhenopacketLab",
"phenopacketSchemaVer…