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Copy 50 images of square trees from IJSEM via Ross Mounce and use as main test material. Use to determine types of processing error and corrective actions.
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Something we never discussed (or I don't recall anyway), the first time through was the issue of rooting. I see at least three issues here:
1. Styling the "root" of the tree. It's easily conceivable t…
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This is the **holy grail** of metadata infrastructure and ostensibly the primary purpose of EML, see [Jones et al 2006](http://dx.doi.org/10.1146/annurev.ecolsys.37.091305.110031). Despite that, inte…
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Hi,
In `iqtree`, it is possible to perform multiple tests of branch support, each one being assigned to the same branch delimited by `/`. As far as I can tell, biophylo cannot parse these trees.…
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Following on our discussion of the main pre-visualization problem, i.e. How can we define and build a richer tree, with arbitrary properties on its elements? In one sense, this is a solved problem in …
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The API documentation explains how to fetch the nexson for a study, but doesn't say anything about how to create a study in the first place, or update one. We have taken as a goal that the API documen…
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Consider use-cases and query consultants about requirements for a tree viewer for web tool and for mobile app.
arlin updated
8 years ago
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The checklist says "Is topology rooted or not?" but what one really needs to know is whether the root implied by the representation is known (or believed) to be the biologically meaningful root. That…
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Can you specify dependencies from other standard R repositories as well? (Or more ideally, just extract the repositories URLs from the AdditionalRepositories list of the DESCRIPTION file)
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There are a few improvements we probably want here:
- move support values from node to edge popup?
- add node-id to all node popups (discreetly, or prominently for unlabelled nodes)