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You'll get tired of my issues soon! I need to run on HPC (CentOS) because of the large numbers of files.
However, I cannot install the rpm without root access. I tried some trickery to extract it f…
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Hi, a forked project already seems to include Singularity support, is it possible to include this in the main toil project? Many HPC providers only allow Singularity containers http://singularity.lbl.…
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Hi,
I wanted to test StellarPGx with cram files. However, I do not get a result and I do not see any error. The only output I see is this
```
N E X T F L O W ~ version 22.10.0
Launching `main.…
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Hello,
I am Thomas, a research associate working in James Brenton's lab in Cambridge, UK
Many thanks for building such an awesome tool! I look forward to using it.
As discussed in the latest …
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Using Mac Apple M2 Pro
Running nextflow run main.nf -profile test,docker -with-docker alpine -plugins nf-ga4gh,nf-tower --outdir local
Error: The requested image's platform (linux/amd64) does not ma…
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Hi,
I'm getting an error that states: `AssertionError: It looks like Nextflow is not installed. It is required for most nf-core functions.`
However nextflow has been installed in my system & is …
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# Broken Links
**This is an automated issue created in a weekly continuous integration job 🤖.**
This issue contains a list of links external to The Turing Way that appeared to be broken when the che…
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Expected behavior:
With previous test files (small, 800-line sliced fastq), behaves as expected and FilterMutectCalls completes successfully. With large fastq files or full-size files, FilterMutectCa…
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### Description of the bug
Hi,
I just get an error after exectuing a test command:
```
ERROR ~ Error executing process > 'PGSCATALOG_PGSCALC:PGSCALC:REPORT:SCORE_REPORT (cineca)'
Caused by:…