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From https://forum.image.sc/t/download-vsi-files-from-omero-fails/83314 .
Equivalent in Insight: https://github.com/ome/omero-insight/issues/188 which has been fixed https://github.com/ome/omero-in…
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Dear all,
I am seeing errors while uploading some Zarr files:
```
PATH SIZE ERRORS UPLOAD STATUS …
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We will upload image files to the [Image Data Resource](https://idr.openmicroscopy.org/) and add URL and metadata information to the [Broad Bioimage Benchmark Collection](https://data.broadinstitute.o…
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I am trying to run minerva-author on a H&E dataset of file type .scn . Since, minerva supports OME-TIFF/SVS formats, I opened the .scn file in QuPath (https://qupath.github.io/) and exported it out as…
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Don't you think Tiff files should be checked even if they only have .tiff or .tif extension ?
In OMETIFFFormat.java:
``` java
@Override
protected String[] makeSuffixArray() {
return …
hadim updated
6 years ago
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After talking with the BioImage Archive people, I think implementing OME-zarr support (remote and local) would be a HUGE driver for adoption. Here's some samples I got from them:
1. The first one, …
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With @zonia3000, we prepared a testing environment for HTTP data access that requires BasicAuth (i.e. username and password) authentication.
1. Prepare the following `Dockerfile`:
```
FROM ghcr.i…
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in addition to #1067, we should still add neuroglancer as a service for the ome.zarr files.
this piece of code is for multiple zarrs, but could be easily adapted i think in javascript for a single…
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Hi
Great tool, thanks!
I've managed to get Calculate-Transforms to work on some ome.tiff files but when I tried to Apply-Transforms I get the following error:
`ERROR: Cannot invoke method readI…
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Previously, we were able to use a bash script and run Ashlar on Linux using:
ashlar "${c[@]}" --pyramid --flip-y --maximum-shift $MAX_SHIFT --filter-sigma $SIGMA --align-channel $ALIGN_CHANNEL -o $…