labsyspharm minerva-author issues

labsyspharm / minerva-author

Tool to create images and configuration files for Minerva-Story

MIT License

15 stars 14 forks source link

issues

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Fix windows build

#82 Yu-AnChen closed 2 weeks ago
1
Masks loading from ome.tiff but a significant number of cells missing from class listed in CSV

#80 miantgta opened 2 months ago
0
Publish: directory of "publish" is name of last "save" file

#79 thejohnhoffer closed 7 months ago
1
Get pyinstaller to include imagecodecs to support ome-tiff with compression

#78 jmuhlich opened 8 months ago
0
Channel visibility toggle does not work

#77 jmuhlich closed 8 months ago
1
Opening existing story changes save file base name to untitled-DDDDDDDD-TTTTTT

#76 jmuhlich closed 8 months ago
1
Initial view does not match what is shown in edit mode by default

#75 jmuhlich closed 8 months ago
1
Auto Group button should remove the Overview group

#74 jmuhlich closed 8 months ago
1
Fix threading issues in auto-threshold code

#73 jmuhlich closed 8 months ago
1
channel min/max autodetection is only applied to the first two channels

#72 jmuhlich closed 8 months ago
1
Round autodetected channel min/max for integer dtype images

#71 jmuhlich closed 8 months ago
1
Add pyinstaller tweak for xsdata_pydantic_basemodel

#70 jmuhlich closed 8 months ago
0
Support for arbitrary downsampling ratios

#69 thejohnhoffer closed 1 year ago
0
default to empty marker and cell links

#68 thejohnhoffer closed 1 year ago
0
Parallelized rendering

#67 thejohnhoffer closed 1 year ago
1
Unable to open RGB ome-tiff

#66 Yu-AnChen closed 1 year ago
1
Minerva Publishing Issue

#65 Shadi9393 opened 1 year ago
2
Auto-generation of MITI waypoint

#64 thejohnhoffer opened 1 year ago
0
Bug when switching waypoints after editing arrow text

#63 thejohnhoffer closed 1 year ago
0
Generate meaningful names for multiple arrows

#62 thejohnhoffer opened 1 year ago
0
Improve the story naming workflow

#61 thejohnhoffer opened 1 year ago
0
override marker names when loaded with saved story.json

#60 thejohnhoffer opened 1 year ago
1
measure single-channel vs multichannel jpg folder size

#59 thejohnhoffer closed 1 year ago
0
preview/export single channel stories

#58 thejohnhoffer closed 1 year ago
0
full client-side refactor

#57 thejohnhoffer opened 1 year ago
0
index.html file not reading the published exhibit.json file

#56 ninning opened 1 year ago
2
Allow pixel size to be set, manually or automatically

#55 jmuhlich closed 1 year ago
3
Bump minerva-browser version to latest in published html output

#54 jmuhlich closed 2 years ago
1
Failure on publishing with masks enabled

#53 jil24 opened 2 years ago
3
Draw masks as outlines or as semitransparent

#52 jil24 opened 2 years ago
0
Invalid tiff file - not enough values to unpack (expected 2, got 1)

#51 Starahoush closed 2 years ago
2
start issue

#50 YubinXie closed 2 years ago
8
Remove extraneous script content from published index.html

#49 jmuhlich closed 2 years ago
0
Update pytest suite to expect `/gamma/images` endpoints.

#48 thejohnhoffer opened 2 years ago
1
Fix rendering bug in JPEG output

#47 jmuhlich closed 2 years ago
0
Skip rendering when dynamic range is zero

#46 jmuhlich closed 2 years ago
1
Make resource_path construction more robust

#45 jmuhlich closed 2 years ago
1
Update and streamline conda env definition

#44 jmuhlich closed 2 years ago
0
ImportError: cannot import name 'escape' from 'jinja2'

#43 yolandaas closed 2 years ago
6
Add dockerfile and compose

#42 aevo98765 opened 2 years ago
0
Adding a dockerfile and docker-compose.yaml

#41 aevo98765 opened 2 years ago
1
When adding segmentation masks, only "all masks" visible

#40 thejohnhoffer closed 2 years ago
0
add custom JPEG lossiness

#39 thejohnhoffer opened 2 years ago
0
add custom JPEG lossiness

#38 tvquizphd closed 2 years ago
0
When adding segmentation masks, only "all masks" visible

#37 tvquizphd closed 2 years ago
0
Issues with mounted drive on Windows

#36 thejohnhoffer closed 2 years ago
1
Loading JSON in Windows through Parallels on MacOS

#35 thejohnhoffer closed 2 years ago
1
Fix bug where JPEGS always render with min intensity = 0

#34 jmuhlich closed 2 years ago
0
Consider replacing ZarrWrapper with zarr view API

#33 thejohnhoffer closed 2 years ago
1
Image file not found

#32 josenimo closed 2 years ago
2