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BioPortal REST API call to retrieve all mappings between two ontologies:
http://data.bioontology.org/mappings?ontologies=GO-PLUS%2CRH-MESH
... returns a large number of empty pages. Page count …
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Dear all,
The proposal has been made to obsolete to GO:0019551 glutamate catabolic process to 2-oxoglutarate
See:
https://github.com/geneontology/go-ontology/issues/15331
(read from the botto…
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COB changes preferred labels of several ontologies, which is kinda "injection".
Examples:
id: GO:0005634
name: cell nucleus (instead of nucleus)
id: GO:0003674
name: gene product or complex a…
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[stack.txt](https://github.com/ncbo/ncbo_annotator/files/1952429/stack.txt)
When expand_mappings=true and we do not restrict the ontologies to use for the annotation, using include=X (any attribute…
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These are included in go-plus.owl, but not go-plus.json.
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I like how robot has a very predictable pattern for commands/operations, with most named as a single verb
This is the current set of commands:
|command|desc|
|---|---|
|add-taxon-constraints|T…
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Hi, can we please get the `ncbo_services` tool https://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?repository_id=97091616e31dbc3b&changeset_revision=ebf11126df7c&use_panels=True insta…
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At the moment we have the ability to properly type some ontologies with their corresponding BM categories (e.g. MONDO classes get typed with biolink:Disease https://github.com/biolink/kgx/blob/b4e1e5e…
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Change the final endpoint IRI to something sort and concise in the final mappings ttl file
eg.
http://www.semanticweb.org/ardavan.akhalij/ontologies/2021/11/untitled-ontology-7
TO
http://data.grou…
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This is a meta-issue that collects a number of issues relating to schema/vocabulary/ontology knowledge that is implicitly encoded in the mappings used by D2RQ:
- VoID servlet doesn't work for R2RML ma…
cygri updated
10 years ago