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I've noticed that the frequency panel is very laggy even on high-end hardware when there are 2000 possible colorings (as for Nextclade lineages) in the Europe build: https://nextstrain.org/groups/nehe…
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Sub-lineage of:JN.1
First: EPI_ISL_18819543, Japan, 2023-11-28
Latest: EPI_ISL_18944034,China, 2024-02-20
No. of seqs: 36( China 20 USA 8 Germany 4 Singapore 1 Japan 1 Poland 1 Oman 1 )
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Proposition of curation of lineage_notes.txt file (formating issues etc... )
[lineage_notes.txt](https://github.com/cov-lineages/pango-designation/files/12599467/lineage_notes.txt)
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Please forgive me for my ignorance if this is already implemented - Is there a method to download the mutations of variants through the API? I noticed 2 days ago the download button on lineage reports…
tyhho updated
2 years ago
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### Context
`augur clades` currently places clades by finding the biggest branches on a tree that satisfy each clades defining mutations as provided by the user.
This method has a few downsides:…
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BQ.1.28 was proposed in https://github.com/cov-lineages/pango-designation/issues/1415 and was designated as BQ.1 + C44T, A1777G, G6734A, C20429T, C25096T, G25595T, T29492C, ins22303TCAAGATGGATG. The d…
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Suggested in #279; related to #265 and #258.
Would require changes to API and front-end.
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We know that a number of our recombination nodes are erroneous, and a number are probably correct. In particular, the ones that are designated by an `Xyy` Pango designation are likely correct.
We s…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/656
### **Description**
**Sub-lineage of:** XBB.2.3.3
**Earliest sequence:** 2023-7-30, Netherlands, Noord-Brabant —…
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This week (2022-04-17), I noticed the [public trees](http://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/UShER_SARS-CoV-2/) have a new(?) nomenclature for recombinant lineages that takes the format `mis…