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Hi,
I've generated VCF files from single-end FASTQ using PHEnix pipeline. Then I tried to add them to database and I got this message:
```
Namespace(command='vcf_to_db', config_file='/home/use…
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Hi
We have made a chemcomp style cif via `gemmi::make_chemcomp_with_restraints`, `gemmi::add_chemcomp_to_block` and `gemmi::cif::write_cif_block_to_stream` which restrains a phenix run.
Buster …
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the reduce.py script calls `reduce` but doesn't pass it's return value, see
https://github.com/rlabduke/reduce/blob/master/command_line/reduce.py#L20
So `reduce` has sometimes return status 1, but `ph…
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**Describe your feature**
Currently only the VM snapshots are listed under the Files tab in the running and stopped VM list views. It would be desired to have all experiment artifacts namely packets…
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Hi,
I am trying to run cryofit2 on one of my maps. It seems it runs. But it ran already for 400 iteration but did not write a single pdb file yet. I am wondering how many iterations does it make? a…
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Hi there, I found a couple issues in your `setup.py` file:
* You should use
`from setuptools import setup`
instead of
`from distutils.core import setup`
since you use the `install_require…
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I'm attaching a serialised system of two phosphatidic acids parameterised using GAFF2 (ANTECHAMBER via phenix.elbow, for the record). I realise part of the problem is that they're non-physiological (a…
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Right now there is no obvious way to change a `DataSet` instance to a different spacegroup which possibly has a different `basisop` and/or reciprocal asu. For unmerged data, I think something along th…
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Originally created by @glattercj on *Fri, 12 Feb 2021 22:21:46 GMT*
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When adding the soh app to a scenario config, if a host doesn't have miniccc running (either not injected properly or didn…
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YJ asked:
> could kindly share the CellProfiler pipeline with me if you have the CellProfiler pipeline of the LUAD dataset which can get the CellProfiler morphological profile data?