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Hi,
I've encountered today a possible bug while parsing HMMER3 text output. In some rare cases HMMER appends additional lines below line indicating the end of results section ('//'). In such case p…
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Hi there, I have a problem with v1.26.2. It segfaults on exit (GUI).
It was build with
```bash
qmake-qt5 -r PREFIX=/usr CONFIG+=x64 QMAKE_CFLAGS_ISYSTEM=
make
```
I tried it on two different m…
ghost updated
7 years ago
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Hi,
I've tried to run the example in metAMOS version 1.5rc3: sh test_phylosift.sh
And then it shows the following error. Could you help me answer this question?
```
Warning: BLASR is not fo…
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Hi while running in default mode a set of proteins against optimzed bacteria (hmm) i get an error
...
Reading idmap /home/david/work/sources/eggnog-mapper/data/hmmdb_levels/bact_50/bact_50.hmm.idmap…
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Hello
When I try to use MetAmos for processing of single .fastq files, the pipeline fails to link the file with single reads to `lib%d.seq` (**EXAMPLE 1**) and crashes subsequently, issuing a warnin…
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Hi!
I have passed the run_pipeline_test.sh test.
Then I tried to run pipeline on AWS (m4.16xlarge) to analyze two different data, one is 1 G and the other is ~4 G. But the pipeline all failed at the…
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Hi Sean,
Just spotted a minor issue. We've used a multi-hmm to search a bunch of genomes with either nhmmer or hmmsearch. When we use "-A" we get some lovely Stockholm alignments, but it'd be handy t…
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When trying to run either run_pipeline_test.sh or runPipeline more generally I get the following sort of error:
```
./run_pipeline_test.sh
Warning: Newbler is not found, some functionality will not b…
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I could see uniprot protein database has been used in your pipeline.
1) Does uniprot protein database used only for functional annotation purposes or for any other steps in the pipeline?
2) What are …
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Hi there,
I have some question about metamos results and process.
1. I would like to know the meaning of '+sample1' in proba1 N50 plot graph of FindORFs section.
2. According to the paper of metamos,…