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When run the tutorial "https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Multiome.html"
The output figures are all correct but when I tried to save them:
```{r}
#Save Plot
plotPDF(p1, p2, p3…
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This issue serves as a list of observations about how the plotting pane differs from the normal expectations of an R graphics device (in the sense that these should get fixed to bring it in line with …
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With all the data that any benchmark gets as results and the amount of times operations tend to be executed, its not a bad idea to also allow outputting this kind of graph
![Combined Jitter Scatter p…
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An error occurred: Could not connect to R!
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Hello,
Thank you for developing this program! I'm currently struggling to plot the results of an A00 analysis, with nodes converted to real time based on a pedigree mutation rate. I see that there …
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https://github.com/databio/MIRA/blob/930be3b30c3b7ba88fa10e535e6bf123244048e0/R/plotting.R#L67
similar issue raised in #14
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Operating system
- [X] Linux
- [ ] Mac
- [ ] Windows
### Operating system version
NAME="Rocky Linux"
VERSIO…
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Many of the internal functions, for instance in tplotfunctions.R, have names that cause confusion as they are not easy to identify as project specific functions.
Examples: pdff
Can we find a better …
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### Describe the bug, what's wrong, and what you expected.
Plotting `PolyData` with invalid faces/cells causes a crash. See code below.
Not sure if it would be a good idea to do a check for invalid …
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For "cmp-plot.r" and similar plotting scripts: An issue with necrosis trigger and necrotic data is that cumulative measures should not be plotted with a moving average; however, "number of cells" and …