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Hello !
I have a question more than an issue, but maybe you can help me,
I am annotating a dozen of arthropods assemblies from a same genus with braker3 (arthropoda prot + RNAseq data),
For a…
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Hi!
This is a set of dumb questions, not an issue - but that isn't a category!
I am new to version 3, and I would like to use it for annotating RNA viruses I have already curated the sequences f…
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See https://github.com/obophenotype/upheno/issues/572 for original ticket;
The author (@xianshu1994) is working on developing an algorithm to predict HPO annotations of unannotated human genes. The…
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Hi,
The example shows how to do DE analysis with three predictors. Let's say I have only one predictor, the case,control information, and I would like to find DE genes between the two groups. How w…
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hi!
I had problems with using funannotate (1.8.14) for gene prediction.
Here is my input command: funannotate-docker predict -i genome.fasta -o predict -s "XXX xxx"
But when training the model,…
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Dear cdhit development team,
I have a big dataset. Because I predicted genes for each metagenome fasta using the prodigal software, then I got 16 prodigal annotated gene files, each file size is ar…
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hi,
I download the vOTU.fna (There are 5251 vOTUs in there.)data in the text and used the MGV pipeline(https://github.com/snayfach/MGV/tree/master/viral_detection_pipeline), like this
````
cond…
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Hi Gerry,
thank you for this very useful tool that accounts for the different confounding factors and errors when dealing with the comparison of gene sets between species and lineages.
I underst…
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Hi there!
I would like to validate experimentally some fused genes. For doing that, I should keep the most expressed isoform for each gene. I would like to know how FusionInspector decides the iso…
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What do synthetic lethals share? Can we predict based on GO terms if two genes are going to be synthetic lethals?