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Aim: Import high confidence GO annotations (GO term to gene) for GO terms directly linked to CL terms - bidirectional by and object property restriction.
The links from GO terms to Genes (proteins)…
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Check annotations to GO:0010737 protein kinase A signaling
Annotations are here: https://docs.google.com/spreadsheets/d/12PMtUTxC4FMVGkyH5drkMi3i30v1K_Q7uhL_lJ-MSbQ/edit#gid=0
AgBase | 1
ARUK-U…
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Hi, currently the formatting of SPARQL queries aligns predicates/objects based on the length of the subject, e.g.:
```sparql
PREFIX rdfs:
PREFIX skos:
PREFIX up:
SELECT DISTINCT ?diseaseLa…
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* **PTHR ID & PTN node:**
I have a few annotations for cyclosporin A binding from lots of sources. It seems odd since cyclosporin is a compound isolated from soil fungus and used as an immunosuppre…
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## Describe the issue
Some BND variants are missing vep annotations, while the rest have them.
## Additional information
### System
- VEP version: 113
- VEP Cache version: 113
### Full VEP…
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Based on #1641. Look at some examples for this case:
```
80256,aa_mismatch,human_proteoform_glycosylation_sites_pdc_ccrcc
```
Lets try to find out what happened. If the problem is that the glycan …
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I spotted a couple of phenotypes from this paper PMID:19056896 which have the extension "affecting" with no target gene specified.
Opening this ticket so I remember to look into it.
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> What do we have annotated as "residue extensions"
I cheated and looked in the GAF file rather than querying Chado. There are 15 annotations with a `residue()` or `modified_residue(…
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- [x] GO:0103040 aldose sugar dehydrogenase activity EC:1.1.5.- >> replaced EC def xref by MetaCyc, add PMID for e. Eoli paper since the UniProt entry P75804 has no EC or RHEA.
- [x] GO:0102910 dirig…
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It would be good to provide clear guidance on when a species in an AE must match that in the primary annotation.
From ticket #103 we have so far decided that Species must match in GO annotations an…