Cellular-Semantics CL_KG issues

Cellular-Semantics / CL_KG

Building a Cell Ontology Knowledge-Base from data, and LLMs

Apache License 2.0

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Spurious in_taxon links between GO and Mus musculus

#55 dosumis opened 16 hours ago
1
Problem with linking markers to Cell_clusters

#54 dosumis opened 17 hours ago
0
Bridge CL PRO terms to uniprot

#53 dosumis opened 18 hours ago
0
Specify CURIEs for Uniprot

#52 ubyndr closed 2 days ago
1
Generate 'pseudo bulk' summary stats for gene expression in clusters

#51 dosumis opened 5 days ago
1
Specify CURIEs for uniprot

#50 dosumis closed 2 days ago
1
Bridging PRO, proteins, genes, transcripts

#49 dosumis opened 6 days ago
5
Add missing curie mappings

#48 ubyndr closed 1 week ago
1
Remove pcl based filtering in construct_subclass_of_intersection SPARQL query

#47 ubyndr closed 1 week ago
0
Curation issue in Curated_data_KG_Mo_Group - KG sheet

#46 ubyndr opened 1 week ago
0
Update semantic tags to cover genes proteins and go

#45 ubyndr closed 1 week ago
1
Update CL and GO ontology purl

#44 ubyndr closed 1 week ago
0
Update semantic tags to cover genes, proteins and GO

#43 dosumis closed 1 week ago
0
Update collect to ensure full representation of CL and GO term relationships

#42 dosumis closed 1 week ago
0
Curated Lung and Skin Data

#41 JABelfiore closed 1 week ago
1
Review curation SoP

#40 dosumis opened 2 weeks ago
0
Typo Correction - "broad lineage" to "broad_lineage" in Dataset

#39 ubyndr closed 1 week ago
1
Add support for chunked download to handle large dataset files efficiently

#38 ubyndr closed 4 weeks ago
0
Fix trailing whitespace issue in 'Content' filter comparison

#37 ubyndr closed 4 weeks ago
0
Report on datasets loaded & other summary stats

#36 dosumis opened 4 weeks ago
0
Add number of cells to each cell set node

#35 dosumis opened 4 weeks ago
1
Add missing 'Supercluster: IT-projecting excitatory neurons' dataset

#34 ubyndr closed 1 month ago
0
Config update 20241016 v2

#33 ubyndr closed 1 month ago
1
Config update 20241016

#32 ubyndr closed 1 month ago
0
Make CL_KG helper ontology (separate ODK)

#31 dosumis opened 1 month ago
1
Add missing metadata fields

#30 ubyndr closed 1 month ago
0
Add helper ontology with property chain for broad/exact match

#29 dosumis opened 1 month ago
0
Ensure all obs metadata fields from CZI schema are in KG

#28 dosumis closed 1 month ago
0
integrate FR match similarity scores

#27 dosumis opened 1 month ago
1
Update Access Guide for Connecting to CL_KG

#26 ubyndr closed 2 months ago
0
Add curated datasets and update ontology configuration in data pipeline

#25 ubyndr closed 2 months ago
0
Document how to curate datasets for loading where place curation files

#24 ubyndr closed 2 months ago
1
Permission fix for publish docs actions

#23 ubyndr closed 3 months ago
0
Set up mkdocs documentation to run on this repo from docs folder

#22 ubyndr closed 3 months ago
0
Update anndata2rdf image tag

#21 ubyndr closed 3 months ago
0
General refactoring and clean up

#20 ubyndr closed 3 months ago
1
dataset version should automatically update with new CxG releases

#19 dosumis opened 3 months ago
0
Set up MKdocs documentation to run on this repo from docs folder

#18 dosumis closed 3 months ago
1
Document how to curate datasets for loading & where place curation files

#17 dosumis closed 2 months ago
0
Curate/load Azimuth datasets

#16 dosumis closed 3 months ago
2
GO annotation import pipeline

#15 dosumis closed 6 days ago
4
Marker management repo for CL and CL-KG

#14 dosumis opened 4 months ago
6
Update README.md

#13 dosumis closed 2 months ago
0
access and query guide for CL_KG

#12 dosumis closed 3 months ago
1
Implement Case-Insensitive Comparison for "Content" Field Filtering

#11 ubyndr closed 6 months ago
0
anndata2rdf image tags have been updated

#10 ubyndr closed 3 months ago
0
Obask refactoring

#9 ubyndr closed 6 months ago
1
Create schema.md

#8 dosumis closed 4 months ago
1
Add schema doc and flesh out with basic schema details

#7 dosumis closed 4 months ago
0
Dockerfile and docker-compose file have been added.

#6 ubyndr closed 7 months ago
0