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can you take a look at:
https://mutalyzer.nl/normalizer/NC_000023.11(NM_000169.3):c.454_456dup
it says: protein prediction is
NC_000023.11(NP_000160.1):p.(Tyr152dup)
but the
AFFECTED PROTEIN…
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Now we have a method to compute candidate GO terms, we should investigate over which pairs of proteins-terms we should make predictions (the limit of the competition is 15k predictions, while the numb…
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## Expected Behavior
I used colabfold to predict two monomer proteins cas9 and deaminase, and I wanted to continue to predict their possible complex structure by multimer method.
While the cas9 p…
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Dear developers
I have run BRAKER3 as follows, from the singularity container:
```
(some slurm params)
# variables
infile=$1
prefix=$2
proteins=$3
bamfile=$4
outdir=$5
# that scri…
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Hi,
When I use EVM to integrate gene prediction, I encounter some genes without a start codon and/or stop codon. But I have used '--stop_codons TAA,TGA,TAG' parameters.
PASA, Cufflinks, Stringtie …
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[Improved prediction of protein-protein interactions using AlphaFold2, Nature Communication 2022](https://www.nature.com/articles/s41467-022-28865-w)
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* RNA-level predictions: free energy changes associated with nucleotide changes within a window (X bp before, X bp after) a nucleotide change; screen for RNAse targets within sequences (not sure if th…
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For @mariacm12 `asap-genetics` pipeline we need to have a protein structure prediction pipeline. @hmacdope to investigate.
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Hi
I'm trying to use dMaSIF for interaction prediction between proteins (taking a target and finding the best binder in a large collection of potential binders)
At the moment, I process both bin…
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I followed your method to generate secondary structure sequences for proteins in cafa3 and then performed one-hot encoding on them to create features. However, the prediction performance is not satisf…