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https://arxiv.org/abs/1706.02216
> Low-dimensional embeddings of nodes in large graphs have proved extremely useful in a variety of prediction tasks, from content recommendation to identifying prot…
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## Environment Information
Open Babel version: 3.1.0
Operating system and version:macOS Ventura (13.2)
## Expected Behavior
Create OBMol object without warning
## Actual Behavior
Created…
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Hi all!
For my project, I wish to describe the protein-ligand interactions between Mur Ligase and a known inhibitor, and hopefully, use this information to modify the molecule to extend its spectr…
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Structure 7BZ5
1. I used Select by Distance to identify amino acids that are in the epitope. I chose the H and L chains in the first set and the spike protein in the second set.
2. Opened Selec…
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Hi,
first of all: absolutely great work - thank you so much for putting so much time and effort into sharing the training code for SOTA structure prediction! :)
From my current understanding, all t…
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Add gene name query to the existing protein interaction network generation and be able to get interactions with interactors referenced with their gene name (feature that would solve #55)
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Hi Daniel
For some unknown reason everytime I try to plot 3-way interactions and add data to them, in both planes it uses the same data points (wrongly). Check the image below. Do you know how to c…
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```
record_type,cat_id,cat_label,cat_order
protein,Annotation|Protein Modification,Annotation|Protein Modification,
protein,Biomarkers,Biomarkers,
protein,Diseases,Diseases,
protein,Function,Fu…
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## Add python graph analysis.
Modify edge names so they represent up-regulation and down-regulation for the chemical-protein interactions.
+ With regex reading CTD intermediate file, with informatio…
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On NodeNorm, [ENSEMBL:ENSP00000263368](https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=ENSEMBL%3AENSP00000263368&conflate=true) exists as a single-identifier clique. However, ve…