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Dear Vadim
In the diann results, most of the Protein.ids are uniprot accession ids (from the fasta file I used), but some are accession ids combined by ";" . Some are combined with cRAP-***, I thin…
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Dear BiocTeam,
I am investigating the proteome of human cancer samples and want to insert their genetic variations into the reference proteome fasta sequences to increase the sensitivity of my pept…
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Dear Vadim,
DIANN is really helpful for our proteomic research.
We recently met one problem. For example, in one batch of over 300 continuous sequenced data, 12 of them could not be processed in o…
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Hello,
I wish to move my data analysis to a cluster environment to expedite data analysis due to backlogged data analysis on my local device. I am attempting to run DIANN on my institutions Linux c…
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Dear Vadim,
I would have some questions about the Quantity.Quality.
In a previous discussion (https://github.com/vdemichev/DiaNN/discussions/764), you explained this parameter can filter the precu…
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### Colocar um resumo ou as partes mais importante do abstract (4 linhas máx.) dos seguintes artigos:
- [ ] _P. Zhou et al., A pneumonia outbreak associated with a new coronavirus of probable bat o…
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All: I am rather new to this group & would like to introduce open-source applications that I frequently use in our metagenome/metaproteome workflows (primarily on HPC systems):
00. Omega2: https…
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Dear Vadim
I spent some time testing the performance of 1.9.2 and the impact on protein inference（ on 1.9.1）, and wanted to report back and get some advice.
1. I tested 1.9.2 and 1.9.1 on 6 st…
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Hi,
I am using DIA-NN 1.9.1, so I tried to general a generic tsv (attached). With directlfq 0.2.20 GUI with no setting change, I got the errors below.
[directlfq_in.zip](https://github.com/user-…
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Hi Vlad,
I ran DIA-NN with the following argument on linux with immunepeptidome mzML input. We aimed to profile individual 9-mer peptide which is generated in the 9mer.fa input fasta file. Since we…