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The ocore should write energy levels and atomic information to a file at every frame, possibly putting them all inside a folder so cleanup is easy. FAHClient provides an API call for gathering atomic …
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Add a button to execute and visualize the results. This is not trivial. It involves
- setting up another machine/cluster to act as the executor. openmm is not going to be installed on heroku.
- valida…
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# Description
Protein folding is the newest sampling problem to be released in qiskit nature 0.2.0. We would like to implement some convenience tools and extend the implementation to allow for better…
pbark updated
2 years ago
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Hi, I tried to run the script but I got a result I didn't expect.
For each query there is more than one hit as a result of reciprocal blast.
I'd expect that for every time you want there would be on…
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Functionality which runs a Spearman Correlation of raw DMS scores against a model prediction score.
`correlation_plot(UniprotID, model, dms_table, model_table)`
- UniprotID: accession ID for one …
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### Problem
Hello! I am having trouble getting the bullet points to work on my sphinx_rtd_theme project. I updated my conda environment and it seems that the bullet points were one of the things th…
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It would be nice to include a list of organisations that use Cytoscape.js in the docs.
Please include:
- Organisation name
- Link to organisation site
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Hi,
I'm working on creating on interactive visualization using d3. I'd like to use the API to pull snake plot svgs. I started by pulling the snake plot svg from gpcrdb manually.
For example ht…
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The goal is to create a new PubMed version of lensing. The facets should include gene names, protein names, diseases, organisms / species, mutation profiles, etc.
The map view might be useful to tra…
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KEGG is now available as a rest API:
https://www.biocatalogue.org/announcements/37
This would be much simpler to use, but I could not find a parseable description, so it is unclear if we can auto-gen…