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At GOC 2019b in Berkeley, we briefly discussed providing these kinds of reactions with either more specific types, e.g. something along the lines of 'protein complex disassembly' for dissociation and,…
goodb updated
4 years ago
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Hi,
I'm using your package, but I get the error below. The smallest p-value is `e-80`. How can I correct this error?
Thanks!
```
RESULTS$Q = qvalue(RESULTS$Nominal_P)$qvalues
Error in pi0es…
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### Severity
Is the production site running?
- [x] yes
- [ ] no
Are staff blocked from performing their work?
- [ ] yes
- [x] no
### Descriptive summary
This is a dataset from Proteomi…
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I did several runs, and found that whenever TD hit report is loaded for analysis, in the result page, the number of identified, ambiguous, unidentified families do not add up to the total family numbe…
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A user has added a new tag to called "Top-down Proteomics" (see https://fairsharing.org/bsg-s001213). Details of this methodology can be seen at https://en.wikipedia.org/wiki/Top-down_proteomics
I…
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There seem to be one error message popping up constantly when viewing the "identified proteoforms" table page. see picture.
![ps v3 2 table error](https://user-images.githubusercontent.com/20566230/3…
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Rule 7: Proteoforms may contain N- and C-terminal modifications. These modifications are specified with a
tag describing the terminal modification, separated from the sequence by a dash to the left o…
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Currently, decoy proteoform sequences being set to corresponding theoretical's actual protein sequence
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Taken from Lollipop.regroup_components:
Could be improved. Used for manual mass shifting.
* Idea 1: Start with Components -- have them find the most intense nearby component. Then, go through and …