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Fragpipe sometimes works, sometimes stops with "panic" and "this is a bug" statements. Also, apologies, but Chrome would not allow zip file upload, nor copy/paste of zip file. Original text of the end…
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- You are using `SomaDataIO` :partying_face: ... but have hit a road block :weary:
- Please search previous issues before creating a new one,
to ensure yours is not a duplicate. You can
[edit t…
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Hi Phillip,
I wonder if IRS normalisation is still valid on data with NAs (without imputation)?
In that case, to get the geometric average intensity for each protein, the below modifications will…
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Hi There
I Got the search result but the PDV can't display the spectrum.
Invalid spectrum file path. Please check it.
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I'm receiving the error given below.
MSFragger and PeptideProphet has run before without error.
Can you either please fix it or advice on what the problem is and which restrictions apply were. So I…
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I am trying to run the open workflow
[Open.workflow.txt](https://github.com/Nesvilab/FragPipe/files/9196781/Open.workflow.txt)
over timsTOF-pro data [manifest.fp-manifest.txt](https://github.com/Ne…
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I utilized MSFragger-PD for performing an open search on a set of 12 files, totaling 23 GB in size. Remarkably, the close search of these identical files using SEQUESTA completes within approximately …
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**Hello, i am trying to simulate the galaxy protegenomics database search using searchGUI and peptideshaker but when i try to run peptide shaker it gives me the following error:**
Tue May 23 13:51:…
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Greetings,
I am trying to search my proteomics data against a large protein database containing 39,576,194 forwards protein sequences. When I try to append this protein database with FragPipeGUI ad…
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Various R packages are not included in the Task View:
- First 2 are general packages;
- Packages 3 - 7 use various statistical models to predict certain features/proteins;
- Remaining: other functi…