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ClipBam `--clip-overlapping-reads` can occasionally orphan one read in a pair if it is much longer than its mate and extends past the mate's start, because equal trimming causes the mate to be trimmed…
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**Is your feature request related to a problem? Please describe.**
I'm looking for a simple way to find what to read next with a friend based on our existing "to read" lists.
**Describe the soluti…
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Hi Ian and Tom,
Hope you are well.
We are running a splice junction analysis using human plasma samples processed on a Novaseq 6000 ( RNA sequencing with UMIs).
Analysis Pipeline in brief :
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SJJHK updated
7 months ago
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Feature Description
Hello Project Admin
I would like to Remove this Unnecessary Overlapping Between these Com…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Describe the bug
When i am opening the time table of 1st year then the footer is overlapping with the time tab…
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Your tool extracting the repeated overlapping reads perfectly. But, I need to get the overlapping extended reads which is not there in the reference sequences (please see the picture). is it possible …
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### Preliminary Checks
- [X] This issue is not a question, feature request, RFC, or anything other than a bug report. Please post those things in GitHub Discussions: https://github.com/nebari-dev/neb…
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Hello! Thanks for your helpful tool!
I am trying to assemble long-read sequencing data with short-read polishing. My long read data (nanopore direct RNA sequencing) are from the animals under 25 de…
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#### Is your feature request related to a problem? Please specify.
Ancient DNA fragments are frequently shorter than the read length. For paired end reads, this results in R1 and R2 that overlap. O…