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Some of the GEO datasets are RNA-seq, and there are more and more of them. To load them into Phantasus there are several options:
* By using data from recount2 project (https://jhubiostatistics.shiny…
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Use tximport along with the gene-to-transcript mapping already contained within the processor to implement this part of the salmon pipeline:
 that would allow this. We would have to come up with something really hacky, or dow…
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I've received feedback from users interested in being able to plot the base-level coverage for a set of samples in [recount2](https://jhubiostatistics.shinyapps.io/recount/).
One way of doing this …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LieberInstitute/recountWorkflow
Note that this pa…
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Hi,
I've talked with Carl and I know you are quite busy. Which is why I tried myself to figure out a way to upload files using the v2 API by looking at `rfigshare::fs_upload()` and `rfigshare:::fs_up…