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Release preparation tickets (labelled [R2.0](https://github.com/riboviz/RiboViz/labels/R2.0)):
* [all](https://github.com/riboviz/RiboViz/issues?utf8=%E2%9C%93&q=label%3AR2.0)
* [closed](https://g…
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We need to test-run RiboViz on some new datasets to check that it can actually work. These will not be incorporated into the automated testing, but will provide a larger informal test. And also move t…
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Using experiences from #48, write a blog post for the SSI blog, https://www.software.ac.uk/blog (and link to previous blog post, https://www.software.ac.uk/blog/2019-07-24-riboviz-understanding-protei…
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Based on work from #48 and prototype in [workflows](https://github.com/riboviz/workflows):
* Implement Nextflow script, `prep_riboviz.nf`. Ensure that temporary and output files are copied (via Nex…
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I ran the following command to curate reference for analyzing ribosome profiling data.
xpresspipe curateReference --output ./ --fasta genome_fasta/ --gtf ./transcripts.gtf --protein_coding --trunca…
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Hello, I am wondering if salmon can be used to quantift ribosome profiling data(Ribo-seq) ? Because I saw that in the index step, the k-mer is 31 by default. However ribo-seq reads is usually less tha…
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Hello!
I would like to test your tool, as it seems really fitting to interpret my ribosome profiling data!
I got the earliest issue possible as I get this warning message when I am trying to ins…
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My purpose for using Riboseq is to help define what the CDS, 3' or 5' UTR are for the RNA-Seq and Ribo-Seq data I have. I like the `ribo` data structure developed and the implementation of riboflow, b…
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There are a number of data files located in the RiboViz repository e.g. within:
* https://github.com/riboviz/RiboViz/tree/master/scripts
* https://github.com/riboviz/RiboViz/tree/master/vignette/i…