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Should be possible to add several guide RNAs and a single repair DNA (if any)
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Hi,
I have run a fastq.gz sample file on NanoCLUST using following command
**nextflow run NanoCLUST/main.nf -profile conda --reads barcode01_filt.fastq.gz --db db/16S_ribosomal_RNA --tax db/taxdb/**…
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Hi,
I am trying to compute the Cistarget step of pyscenic after obtaining meta cells with the metacell2 pipeline and then the GRN with arboreta package and saved in a tsv file. However, I keep obtai…
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Configuration file: db_main.toml
Description: miRDB is an online database for miRNA target prediction and functional annotations.
```toml
[db_mirdb]
source_url = "http://mirdb.org/download/miRDB…
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Hello,
I would like to go through the tutorial, but the link (www.readthedocs.io/mubind) for single-cell genomics data in the data availability section of the paper does not seem to work.
Could…
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Coordinates based on transcripts depend on the exon structure at least. Coding position requires also cds start and end.
Proposal: Implement TranscriptLocation, à la HGVS, by creating a class that …
reece updated
2 years ago
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Dear there,
I see CLASS is genome-guided transcriptome assembly. What is the meaning of that? My question is CLASS a de novo assembler or annotation-based methods?
If it is annotation-based met…
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Hello,
Thanks for putting together this resource and organizing these methods in a standardized way, it's been very helpful as someone new to machine learning classification.
I was wondering i…
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Hi Rémi,
I hope you're doing well!
I'm mostly through your documentation, but I encountered an error today while trying to run Cicero via this script:
```
# Compute ATAC peak networks
hummus_…
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Hi,
I am trying to run the matrix-clustering however I cannot figure out what is wrong with my input.
I had also some problems during installation, but in the manual it is written that it can ha…