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We need to collect a few current and anticipated needs of representing stages directly as part of our phenotype definitions, for example, phenotypes where prenatal time stages are affected. It would b…
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I really love this tool and the output it gives, even for users like me.
From the RBP researcher point of view I have small suggestions:
- A normalization of overlaps like it is done in homer ( …
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Dear samtools developers,
This is Bo Li, the developer of RSEM. When I used samtools sort -n to make sure the alignments are grouped by read names, I found an issue. If we have paired-end reads, samt…
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I used "trinotate_report_summary.pl" to generate a "cXp_summary.html" file, however, this html file shows up blank when opened in Google Chrome or Firefox.
Why?
and, here are the contents of the…
ljyls updated
3 years ago
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### Contact Details
mathias.charconnet@live.fr
### What happened?
Hi,
I have been using viennaRNA using sourcecode and python, and there are several interesting options that I could use with th…
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transferred back from https://github.com/cov-lineages/pango-designation/issues/2680
In the batch uploaded today from Philippines i noticed a weird a double AA mutation in the spike in a row.
Being…
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* "Do we need to define what is a miRNA before jump into naming?"
**Deadline to participate: May,01.**
**Suggested answers:** a) we should do it before moving forward, b) we can move forward. Pl…
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```
./RunPMFECommand.sh pmfe-scorer --sequence /projects/rna/rnatope/Data/Onivara/fasta/o.nivara_tRNA.fasta --structure Examples/o.nivara_t99_mfe.txt -a 3.4 -b 0 -c 0.4 -d 1
```
outputs
```
Mult…
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A video tutorial on this process can be found here: https://www.youtube.com/watch?v=ZnXBa9RdliU
![Untitled video (2)](https://github.com/TomkUCL/SARS-CoV-2-Helicase-nsp13-Public-Antivirals-Virtual-…
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hello,
Thank you very much for the tool you developed to predict the secondary structure of a sequence. However, if we need to predict the probability of a sequence maintaining a linear structure, ho…