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Hi, could you,please, clarify what is the current way to import `PEtab` models to `dMod` (in particular SBML files) ? I have tried `PEtab2dmod` library with `libSBML 5.19` but I have a number of issue…
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It seems like the code in [SBML](https://github.com/ICB-DCM/SBMLimporter) is not supported for newer MATLAB versions. I get several errors while trying to process my SBML file, for example, the error …
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Hello everyone,
I am new to Escher converter and I was wondering if :
First, convert directly ,using a python code, a SBML file (containing a model at a genome scale) into a Json file in order to ex…
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Hi. I'm trying to convert an SBML 2 model and I've encountered a bug in the model.manipulation.modify module. Apparently there's an error in one of the functions which prevents the parser from rep…
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The specifications suggest that model files should define namespaces with prefixes:
```
xmlns:sbml=‘http://www.sbml.org/sbml/level3/version1/core’
```
such that XPATHs such as below are well-def…
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Hello,
I tried to import ("File" -> "open SBML model") a curated model from Biomodels (SBML level 3 version 1) into MoBi. But opening the SBML file (sometimes) makes MoBi crash.
Curiously, this …
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```
model foo()
a=3
end
model bar()
b=10
end
A: foo()
B: bar()
```
should output 3 tabs: the main tab, a foo() tab, and a bar() tab in the preview window.
For foo:
```
…
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# Overview
- calling the `MainExtractor` with `-dbPath C:/Masymos/Database/sbml_noAnno -directory C:/Masymos/Data/sbml/curated -modeltype sbml -noAnno -fileMode` and a sbml-files
- results in an exc…
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**Describe the bug**
sybil-SBML will raise compilation errors during install with libSBML version 5.19 or above.
**Steps to reproduce**
Install a recent libSBML, then run
```R
remotes::in…
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**Which problem would you like to address? Please describe.**
The CellML team is about to implement support for parameter estimation in OpenCor, and originally investigated PETab as the format to use…