-
### Description of feature
As discussed in the Slack Channel for scrna-seq on 23rd September 2022:
It will be good to allow --expect-cells in the run with --aligner cellranger option for scrnaseq …
-
Hi Salmon team
Are there plans afoot to support quantification of scRNA-seq data with unique molecular identifiers (UMIs)? UMIs are very commonly used in scRNA-seq data now, and correct quantificatio…
-
Hello,
Thank you for developing such a wonderful method.
Recently, I attempted to execute somatic variant calling from scRNA-seq data, following the step-by-step instructions provided on your GitHub…
-
Hi
We have used `Kit : 10X Genomics Next GEM Single Cell 5' v2 (Dual Index)` for `two healthy PBMCs` as a test experiment before investing on our main design
Now, for running the main experiment…
-
[Single-cell RNA-seq denoising using a deep count autoencoder](https://www.nature.com/articles/s41467-018-07931-2#ref-CR33)
> **Denoising enables discovery of subtle cellular phenotypes**
> Aft…
-
Hello! Our project is currently focused on burst kinetics, and we found your pipeline can estimate kinetic parameters from nonallele-specific scRNA-seq data. We downloaded nnRNA and have successfully …
-
- this will be helpful for users / participants already prominently on the main page of the course
- this is a requirement for being included in The Carpentries Incubator (#12):
Your lesson/propo…
-
Many thanks for this very useful app.
Do you have any plan to make it available as an R package to make its usage more flexible?
Alternatively, could you give easy access to the reference RNA-seq…
-
Hi,
When I run DNBC4tools via singularity, I got an error like this:
```
The chemistry(darkreaction) automatically determined in cDNA : darkreaction
The chemistry(darkreaction) automatically d…
-
Hi there,
I have used BayesPrism to deconvolute my datasets utilizing reference data from a public database. My datasets consist entirely of human bone marrow mesenchymal stem cells and are not cance…