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Hi, I now want to use spatialscope as baseline, but it hardly works on the new dataset.
On the one hand the new dataset doesn't have cell type, I tried to use the clustering results as category label…
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Hello, very great method! But I have normal and treated mouse hypothalamus scRNA-seq data and I wonder could I use this method on my data? Also, could sex bias affect the inference results? I mean, c…
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@mandichen
Hi,mandichen
Good job and I am very interested in your research, but I have some questions.I used the sample data BM2_v0s0_n_200.h5ad and Macosko_cell_cycle_genes.txt to get the follow…
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I frequently work with single-cell multi-omics data (mostly scRNA-seq + CITE-seq, but scATAC-seq is also expected), and it is known that different modalities for the same samples requires separate seq…
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Hi.
In your publication :"Analysis of Alzheimer’s disease scRNA-seq data. The MARS-seq scRNA-seq raw data were download from GSE9896971. The raw fastq file were modified using custom scripts to embed t…
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Hello salmon team! @jamorrison and I were looking through the code and seeing how best we could contribute a new single-cell RNA-seq technology. Our approach (STORM-seq https://www.biorxiv.org/content…
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Hi,
I am very interested in using Dendro for my scRNA-seq dataset which was generated using plate-based Celseq2 method.
I have 4 different conditions, each 3 plates of 384 cells. How does the cell i…
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Dear EcoTyper team,
Hi, all! Hope you been well and thanks so much for sharing amazing tool.
I was following tutorials using new TCGA data with in-house scRNA-seq dataset.
Initially, I run Tuto…
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**Describe the problem concisely**.
RNA-Seq provides quantitative measures of RNA abundance in the sequenced cell types. However, a major question of interest is typically quantitative: is the protei…
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@songeric1107
The colors should be consistent for the cell types between P2 and P7 for the following datasets:
- P2, mouse, scRNA-seq, cochlea (Hertzano/Ament) and P7, Mouse, cochlea, scRNAseq (H…