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Hi there,
I have used BayesPrism to deconvolute my datasets utilizing reference data from a public database. My datasets consist entirely of human bone marrow mesenchymal stem cells and are not cance…
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When I conducted the germline calling process, I noticed that only a limited number of chromosomes were successfully processed into 'phased.vcf.gz,' whereas most of the chromosomes remained unprocesse…
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thank you so much for this great work!!!
could you please provide more train datasets about ovarian cancer ?
i am so pleased that you would reply to this messages
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## Is your feature request related to a problem? Please describe
TRUST4 claims they can call TCRs not only from VDJ-enriched 10x data, but also regular 10x 5' seq and other scRNA-seq protocols.…
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There is currently a lack of readily available tools for the presentation of spatial datasets. I would very much like to see a release of this tool that allows you to visualize spatial data either sep…
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Hi,
I have a question regarding the library size of scRNAseq simulation.
In total there are 2 simulations, one with a librarysize of 20 Mio and one with a librarysize of 5 Mio.
Is librarysize …
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Good day!
I would like to know whether it is possible to use SIMBA in cases where one has partially paired data (some data has only scRNA, others only scATAC and some multiome (RNA+ATAC same cell).…
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For example, I have different time point scRNA sequencing data to explore the clonal structure of these samples. How do I choose the bulk DNA time point? And scRNA-seq and bulk DNA sampling from diffe…
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Hi @WPZgithub ,
When I try to install the CEFCON locally on my PC (windows), I encountered the following error:
```python
#install from downloading github files locally
pip install F:\Project\癌细…
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### Task motivation
Spatial decomposition (also often referred to as Spatial deconvolution) is applicable to spatial transcriptomics data where the transcription profile of each capture location (spo…