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I found EDTA has a problem dealing with nested TEs. For example, here are part of my prediction, apparently, this is a nested area but EDTA named them both as TE_00000681. I found many question mar…
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### Question
Hey guys,
I have been trying to train a model for text classification then convert it to an onnx file for use in transformers js following this video
https://www.youtube.com/watch?…
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I am curious how you evaluate the in-domain generalization of the honesty probe. I found this in the paper
`With this setup, the resulting LAT reading vector reaches a classification accuracy of ov…
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I try to use seq2seq in summarization task. In more detail, I have 60k pairs of abstracts and titles and I'm using modified codes from NMT tutorial. I want to improve my results using word2vec embeddi…
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Hi!
I'm interested in your work and I'm trying to reproduce the results on the data you released, but I'm having some problems.
1, The released sequence data contains `taxid`, and I used NCBI to …
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Hi,
I hope this message finds you well.
I am currently using Genomad for analyzing a dataset of 39,910 sequences. However, I’ve noticed discrepancies in the output files that I need clarificatio…
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When running the pipeline, I get methylation classification results in the GUI, but there are several errors in the terminal. CNV data is missing, and I cannot generate a report from the GUI. I have a…
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python3.8.19
numpy 1.23.0
bert4torch 0.5.1
builtins.ValueError: could not broadcast input array from sh…
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Hi Shujun,
I found a problem for EDTA to identify LTR-RT when an intact LTR-RT close with a solo LTR-RT that is from the same family.
For example, the longer LTR-RT (repeat_region_580) share th…
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Dear authors,
Your work is very valuable. I am a doctor worked in a hospital, not very familiar to the code.
Here is a question, how to know which specific sequence contributed to the classifica…