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Hello,
I have a set of ~400 patients with about 20000 phenotypes (gene expression markers), and ~50,000 variants, of which I am only using ~2400 using the `--exclude` option in the step 1 command. …
Apb58 updated
1 month ago
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compilation output:
g++ -DHAVE_CONFIG_H -I. -DUNIX -I/share/disk6-2/leihx/sunjy/software/boost-1.45.0/include -DHAVE__BOOL -D__NOPLUGIN__ -fopenmp -O3 -MT encore.o -MD -MP -MF .deps/encore.Tpo …
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## Design
**October 21 2024** Superseded by draft [5.2.1-experimental.md](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/drafts/5.2.1-experimental.md)
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This draft …
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Hi SuSiE,
This looks to be a very exciting package, and I'm keen to try it out in the context of GWAS fine-mapping. Thank you for making your work available.
I'm interested if there is any way …
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I am just starting to put this together. The basic idea is that when exploring
NGS data that comes to you in a BCF file, there are lots of ways you might want to
tweak it in the process. For examp…
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**Describe the bug**
The script yaml2ped.py used in call-write_yaml_ped_phrank step in tertiary analysis produces a ped file in which the third column for proband is maternal ID, while according to t…
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This issue involves a new collaboration with Charles Schmitt and Shepherd Schurman of NIEHS to Investigate the use of the Translator/Reasoner architecture in the context of NIEHS clinical data sources…
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您好 报错 使用最新版本docker 也是同样报错
[Mar 20 2024, 3:42 AM] 0.44.1: Pulling from wzhou88/saige.survival
[Mar 20 2024, 3:42 AM] d7bfe07ed847: Pulling fs layer
[Mar 20 2024, 3:42 AM] 9aaaba2ae596: Pulling fs la…
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Hi Joelle!
I am running a gene-based test and this error keeps on appearing.
ERROR: annotation information could not be read. Perhaps check variant IDs matches those in the genotype file?
I d…
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Hello!
I am trying to fit a linear model with ModelArray.lm but am struggling with the time limit required for the model to run. I am analysing the data on a supercomputer with 32 CPUs per task, 50…