-
Hi, we are learning from this project. Because our HPC does not give us the root authority to use Docker, we have to either build a Singularity image based on a Docker image, or build the Docker image…
-
Hi, I am trying to use GROBID on my organization's HPC cluster. I have tried to use it on my own laptop (ARM Macbook), but I keep having trouble running the docker image. Our cluster does not support …
-
**What happened?**
I downloaded the latest version 1.2.2.post1.dev745+gec7aabd. When I tried to press the 'delete' key to delete characters in the GUI, it didn't work and I was not able to delete cha…
-
Hi!
I have been trying to use PyNetLogo inside a container because my university HPC does not have NetLogo 6.3 installed. I have not been able to load a model successfully so far.
I am on a Ubu…
-
Since the biowulf_cluster.config did not work for me, I used singularity.config and I could successfully ran the example.
When I ran my own data, it always failed at the run_star step. Note that I su…
-
while running:
```
nohup sos run pipeline/mashr.ipynb mash \
--container containers/stephenslab.sif \
--output_prefix Ast_Exc_Inh_Mic_OPC_Oli \
--data output/Ast_Exc_Inh_Mic_OPC_Oli.r…
-
Hi,
I noticed that poreCov crashes when running pangolin via singularity and a reasonably modern nextflow version. It seems that recent updates in the path mounting defaults of nextflow broke the de…
-
Using the [tutorial on the LBPM page](https://catalog.ngc.nvidia.com/orgs/hpc/containers/lbpm) on RHEL 8, all of the wget comments to build the Singularity container fail with:
```
wget https://gi…
-
Hello! I am trying to install BRAKER using the singularity image provided on a HPC cluster. I follow the instructions in the website provided (https://hub.docker.com/r/teambraker/braker3), but am unab…
-
During the review session on day 2, I would like to show people how to build a singularity image in docker.
a pain point of some HPC users is that they cannot build their images on hpc and don't ha…